Publikationen

Publikationen von Frau Jun.-Prof. Dr. Franziska Traube

2023 - heute Publikationen im Rahmen der W1-Professur

  1. “Franziska R. Traube.” Traube, Franziska R. 2026. https://doi.org/10.1002/anie.3830778.
  2. “Advances and Applications of Spatial Proteomics: From Organellar Maps to Clinical Translation.” Bernardini, Chiara, Maike Däther, and Franziska R. Traube. 2026. https://doi.org/10.1002/cbic.202500616.
  3. “Increasing TET Expression and 5‐Hydroxymethylcytosine Formation by a Carbocyclic 5‐Aza‐2′‐Deoxy‐Cytidine Antimetabolite.” Däther, Maike, Elsa Peev, Annika Fröhlich, Binje Vick, Sogol Fatourechi, Gilles Gasparoni, Matthias Heiss, Corinna C. Pleintinger, Emmanuel Asu Bisong, Hans Hurmiz, Davide Guglielminotti, Yasmin V. Gärtner, Tina Aumer, Karsten Spiekermann, Jörn Walter, Irmela Jeremias, Franziska R. Traube, and Thomas Carell. 2026. Wiley. http://dx.doi.org/10.1002/anie.6265286.
  4. “Crosstalk between the Methyl-Cytosine Dioxygenase TET3 and the Methyl-CpG-Binding Protein MECP2 Controls Neuronal Maturation.” Traube, Franziska R., Gilles Gasparoni, Anna Winkler, Anna S. Geserich, Hugo Sepulveda, J. Carlos Angel, Xiaojing Yue, Rouhollah Habibey, Victoria Splith, Gülce I. Gökҫe, Grazia Giorgio, Chiara Bernardini, Ruben Sachsse, Constanze Scheel, Marilla Bickerstaff-Westbrook, Martin Biel, Thomas Carell, Volker Busskamp, Anjana Rao, Jörn Walter, and Stylianos Michalakis. 2025. https://doi.org/10.1101/2025.10.29.685266.
  5. “Chemical Proteomics Reveals Human off‐Targets of Fluoroquinolone Induced Mitochondrial Toxicity.” Reinhardt, Till, Yassmine El Harraoui, Alex Rothemann, Adrian T. Jauch, Sigrid Müller‐Deubert, Martin F. Köllen, Timo Risch, Lianne JHC Jacobs, Rolf Müller, Franziska R. Traube, Denitsa Docheva, Stefan Zahler, Jan Riemer, Nina C. Bach, and Stephan A. Sieber. 2025. https://doi.org/10.1002/anie.202421424.
  6. “The impact of Tet3 isoform-specific KO on the mouse retina.” Winkler, Anna, Maike Däther, Constanze Scheel, Grazia Giorgio, Gulce Gökce, Franziska Traube, and Stylianos Michalakis. 2025. Association for Research in Vision and Ophthalmology.
  7. “The Type of DNA Damage Response after Decitabine Treatment Depends on the Level of DNMT Activity.” Aumer, Tina, Maike Däther, Linda Bergmayr, Stephanie Kartika, Theodor Zeng, Qingyi Ge, Grazia Giorgio, Alexander J Hess, Stylianos Michalakis, and Franziska R Traube. 2024. https://doi.org/10.26508/lsa.202302437.
  8. “Analysis of 3760 Hematologic Malignancies Reveals Rare Transcriptomic Aberrations of Driver Genes.” Cao, Xueqi, Sandra Huber, Ata Jadid Ahari, Franziska R. Traube, Marc Seifert, Christopher C. Oakes, Polina Secheyko, Sergey Vilov, Ines F. Scheller, Nils Wagner, Vicente A. Yépez, Piers Blombery, Torsten Haferlach, Matthias Heinig, Leonhard Wachutka, Stephan Hutter, and Julien Gagneur. 2024. https://doi.org/10.1186/s13073-024-01331-6.
  9. “Neocarzilin Inhibits Cancer Cell Proliferation via BST-2 Degradation, Resulting in Lipid Raft-Trapped EGFR.” Braun, Josef, Yudong Hu, Adrian T. Jauch, Thomas F. Gronauer, Julia Mergner, Nina C. Bach, Franziska R. Traube, Stefan Zahler, and Stephan A. Sieber. 2024. American Chemical Society.
  10. “A structurally improved Decitabine analogue induces increased anti-leukemia activity in vivo.” Fröhlich, A., Franziska Traube, B. Vick, M. Heiss, T. Carell, and I. Jeremias. 2024. Thieme.
  11. “CRISPR GENome and epigenome engineering improves loss-of-function genetic-screening approaches.” Stadager, Jannis, Chiara Bernardini, Laura Hartmann, Henrik May, Jessica Wiepcke, Monika Kuban, Zeynab Najafova, Steven A. Johnsen, Stefan Georg Legewie, Franziska Traube, Julian Jude, and Philipp Rathert. 2024. Cell Press.

2021 - 2023 Publikationen aus der Postdoktorandenzeit

  1. “Suppression of SARS‐CoV‐2 Replication with Stabilized and Click‐Chemistry Modified siRNAs.” Traube, Franziska R., Marcel Stern, Annika J. Tölke, Martina Rudelius, Ernesto Mejías‐Pérez, Nada Raddaoui, Beate M. Kümmerer, Céline Douat, Filipp Streshnev, Manuel Albanese, Paul R. Wratil, Yasmin V. Gärtner, Milda Nainytė, Grazia Giorgio, Stylianos Michalakis, Sabine Schneider, Hendrik Streeck, Markus Müller, Oliver T. Keppler, and Thomas Carell. 2022. Wiley. http://dx.doi.org/10.1002/anie.202204556.
  2. “Epigenetic Anti-Cancer Treatment with a Stabilized Carbocyclic Decitabine Analogue.” Traube, Franziska R., Natércia F. Brás, Wynand P. Roos, Corinna C. Sommermann, Tamara Diehl, Robert J. Mayer, Armin R. Ofial, Markus Müller, Hendrik Zipse, and Thomas Carell. 2022. Wiley. https://doi.org/10.1002%2Fchem.202200640.
  3. “tRNA Modification Profiles in Obligate and Moderate Thermophilic Bacilli.” Panosyan, Hovik, Franziska R. Traube, Caterina Brandmayr, Mirko Wagner, and Thomas Carell. 2022. Springer Science and Business Media LLC. http://dx.doi.org/10.1007/s00792-022-01258-z.
  4. Comprehensive Comparison between Azacytidine and Decitabine Treatment in an Acute Myeloid Leukemia Cell Line. Aumer, Tina, Constanze B Gremmelmaier, Leander S Runtsch, Nur Yesiltac, Stefanie Kaiser, and Franziska R. Traube. 2022. Cold Spring Harbor Laboratory. https://doi.org/10.1101%2F2022.02.03.476906.
  5. “5-Hydroxymethyl-, 5-Formyl- and 5-Carboxydeoxycytidines as Oxidative Lesions and Epigenetic Marks.” Schelter, Florian, Angie Kirchner, Franziska R. Traube, Markus Müller, Wolfgang Steglich, and Thomas Carell. 2021. Wiley. https://doi.org/10.1002%2Fchem.202100551.
  6. “Quantification of DNA MethylationDNA Methylation and Its Oxidized Derivatives Using LC-MS.” Traube, Franziska R., Sarah Schiffers, and Thomas Carell. 2021. Springer US. https://doi.org/10.1007/978-1-0716-1294-1_6.

2016 - 2020 Publikationen aus der Doktorandenzeit

  1. “The cGMP-Dependent Protein Kinase 2 Contributes to Cone Photoreceptor Degeneration in the Cnga3-Deficient Mouse Model of Achromatopsia.” Koch, Mirja, Constanze Scheel, Hongwei Ma, Fan Yang, Michael Stadlmeier, Andrea F. Glück, Elisa Murenu, Franziska R. Traube, Thomas Carell, Martin Biel, Xi-Qin Ding, and Stylianos Michalakis. 2020. https://doi.org/10.3390/ijms22010052.
  2. “Distinct and Stage-Specific Contributions of TET1 and TET2 to Stepwise Cytosine Oxidation in the Transition from Naive to Primed Pluripotency.” Mulholland, Christopher B., Franziska R. Traube, Enes Ugur, Edris Parsa, Eva-Maria Eckl, Maximilian Schönung, Miha Modic, Michael D. Bartoschek, Paul Stolz, Joel Ryan, Thomas Carell, Heinrich Leonhardt, and Sebastian Bultmann. 2020. https://doi.org/10.1038/s41598-020-68600-3.
  3. “Recent Evolution of a TET-Controlled and DPPA3/STELLA-Driven Pathway of Passive DNA Demethylation in Mammals.” Mulholland, Christopher B., Atsuya Nishiyama, Joel Ryan, Ryohei Nakamura, Merve Yiğit, Ivo M. Glück, Carina Trummer, Weihua Qin, Michael D. Bartoschek, Franziska R. Traube, Edris Parsa, Enes Ugur, Miha Modic, Aishwarya Acharya, Paul Stolz, Christoph Ziegenhain, Michael Wierer, Wolfgang Enard, Thomas Carell, Don C. Lamb, Hiroyuki Takeda, Makoto Nakanishi, Sebastian Bultmann, and Heinrich Leonhardt. 2020. https://doi.org/10.1038/s41467-020-19603-1.
  4. “Influencing Epigenetic Information with a Hydrolytically Stable Carbocyclic 5‐Aza‐2′‐Deoxycytidine.” Wildenhof, Thomas M., Sarah Schiffers, Franziska R. Traube, Peter Mayer, and Thomas Carell. 2019. https://doi.org/10.1002/ange.201904794.
  5. “Isotope-Dilution Mass Spectrometry for Exact Quantification of Noncanonical DNA Nucleosides.” Traube, Franziska R., Sarah Schiffers, Katharina Iwan, Stefanie Kellner, Fabio Spada, Markus Müller, and Thomas Carell. 2018. Springer Nature. https://doi.org/10.1038%2Fs41596-018-0094-6.
  6. “The Chemistries and Consequences of DNA and RNA Methylation and Demethylation.” Traube, Franziska R., and Thomas Carell. 2017. Informa UK Limited. http://dx.doi.org/10.1080/15476286.2017.1318241.
  7. “2′-(R)-Fluorinated mC, hmC, fC and caC Triphosphates Are Substrates for DNA Polymerases and TET-Enzymes.” Schröder, A. S., E. Parsa, K. Iwan, F. R. Traube, M. Wallner, S. Serdjukow, and T. Carell. 2016. Royal Society of Chemistry (RSC). http://dx.doi.org/10.1039/c6cc07517g.
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